usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 9.24065217391304 16.7630434782609 13.2570434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1057 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 671 Number of spheres polar: 111, nonpolar: 371, out of current total: 671 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.74812 18.68082 6.87253 26.67560 3.27033 23.21995 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 217 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 187 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 8.40826854054054 16.1367832432432 13.8425996216216 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.79267874031266 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23