usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 13.3428 22.17635 6.07065
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1243
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 904
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 904
Number of spheres polar: 176, nonpolar: 479, out of current total: 904
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.35890 23.25823 12.23050 31.53890 -3.88164 16.01962
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 497
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 434
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 422
Spheres center of coords (x y z): 13.5395234123223 20.224990971564 7.40328390995261
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.18901390975542
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 40