usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -26.2826666666667 37.8876666666667 22.4664545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1293 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 927 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 927 Number of spheres polar: 200, nonpolar: 474, out of current total: 927 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.17221 -16.38949 27.90319 47.87269 12.49244 32.45105 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 258 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): -27.3076192213115 38.3170400819672 24.4113000409836 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14769813881977 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 33