usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 14.6626666666667 58.2337575757576 36.0630303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1305 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 881 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 881 Number of spheres polar: 217, nonpolar: 446, out of current total: 881 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.17489 24.58801 48.24746 68.22666 26.14600 46.04178 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 510 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 442 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 405 Spheres center of coords (x y z): 14.7604149135802 58.3829173580247 38.4281419506173 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38042544980937 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 33