usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -25.9901515151515 37.1024242424242 22.5890909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1323 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 889 Number of spheres polar: 199, nonpolar: 429, out of current total: 889 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.80775 -16.15746 27.12884 47.09465 12.59716 32.46769 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 544 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 449 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 388 Spheres center of coords (x y z): -25.5698342783505 36.6457447938144 24.6502554639175 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38745571948572 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 33