usefragsph not on There are 51 ligand heavy atoms Ligand center of coords (x y z): 10.5460196078431 23.902431372549 5.04901960784314 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1299 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 865 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 865 Number of spheres polar: 178, nonpolar: 451, out of current total: 865 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.95700 20.53037 14.19300 33.82542 -4.84957 15.00851 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 496 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 447 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 428 Spheres center of coords (x y z): 10.7536781308411 22.0955899299065 5.95717843457944 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.824196462061 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 51