usefragsph not on
There are 43 ligand heavy atoms
Ligand center of coords (x y z): 13.3498139534884 23.2311162790698 5.99332558139535
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1383
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 903
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 903
Number of spheres polar: 191, nonpolar: 449, out of current total: 903
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.35130 23.30784 13.27667 32.75602 -3.97780 15.84045
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 296
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 245
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 237
Spheres center of coords (x y z): 12.6719780590717 21.3809376371308 6.4363605485232
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.55492740731227
Final number of output spheres is: 45
Number of polar spheres: 7
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 43