usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 13.3498139534884 23.2311162790698 5.99332558139535 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1383 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 903 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 903 Number of spheres polar: 191, nonpolar: 449, out of current total: 903 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.35130 23.30784 13.27667 32.75602 -3.97780 15.84045 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 512 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 463 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 455 Spheres center of coords (x y z): 12.5004587252747 21.4585898901099 6.25110184615385 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32687913039744 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 43