usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 19.8247272727273 29.5881363636364 13.2538181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1176 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 673 WARNING: removing a crystallographic sphere that is distance 42.0194453794907 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 43.7513599102931 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.0235962972758 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.8332775533202 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.9951378479925 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.9468262286771 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.3822990650713 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.6119874321022 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.7480318898817 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.4767589834079 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.3168430072678 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.9240781233581 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.569502166036 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.883994711584 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.2000406854616 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 43.9612547705363 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.4849325886728 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.7355288812781 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.4283094869663 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.565539768152 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.5913427346275 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.4060265632844 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.82667369433 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.8480262855968 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.4775498116358 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.6744209510909 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.6974294452696 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.2557200624957 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.8035367393052 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.8240027431485 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.9810637160151 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.6082012598316 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.0166972528021 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.2857902615798 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.7850399347343 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.2949797884788 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.8122216182765 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.5907449396873 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.5113232828995 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.5368388259371 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.7150365328183 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 43.7295252318156 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.6371676306998 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.940790402795 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0