usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.7094473684211 29.7162894736842 13.8993947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1306 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 756 WARNING: removing a crystallographic sphere that is distance 42.0956189882035 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 43.8564015167683 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.8577374022542 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 33.5399023254392 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.0144512166048 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.4090574994434 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.8482907263373 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.4357447678252 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.5070005554595 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.8582532960944 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.9082428578358 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.4002979224752 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 34.6641921007832 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.4812729129378 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.5124827148196 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.8335758691508 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.5204714799811 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.5464677007435 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 41.7752206217992 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.5945005265492 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.5925839071252 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.9070968553383 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 36.2171427089438 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.3528012886987 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.8315809476686 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.8823847648263 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.9511843556957 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 42.4146745714263 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.5844928261644 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.3821948016697 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.352377044976 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.5667602087601 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 38.5145512890907 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 40.57278459756 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 35.0341932545906 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.3374578807931 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 37.7148691367211 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 39.9816695624382 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 0 Number of spheres polar: 0, nonpolar: 0, out of current total: 0 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 1 Crystallographic spheres are present, so doing continuity based on crystallographic spheres Only 0 spheres are continuous, so increasing continuity by 0.5 to be 3.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 4.5 Only 0 spheres are continuous, so increasing continuity by 0.5 to be 5 After continuity checking, number of spheres is: 0 Final number of output spheres is: 0 Number of polar spheres: 0 Number of nonpolar spheres: 0 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 0