usefragsph not on
There are 42 ligand heavy atoms
Ligand center of coords (x y z): 11.6867380952381 24.3402619047619 5.74588095238095
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1336
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 878
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 878
Number of spheres polar: 125, nonpolar: 532, out of current total: 878
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.70643 21.65013 14.36663 33.73199 -4.20504 15.60102
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 284
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 234
Spheres center of coords (x y z): 11.3418813675214 21.984103974359 6.19398376068376
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.34346640939988
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 42