usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -7.57738095238095 16.9198333333333 25.1216904761905 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1564 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 938 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 938 Number of spheres polar: 302, nonpolar: 421, out of current total: 938 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.54681 2.40497 6.94914 26.81610 15.29080 35.09277 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 230 Spheres center of coords (x y z): -6.56553547826087 16.3685394347826 26.6029207826087 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.97733395571267 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 42