usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -7.60071428571429 16.8752142857143 25.0839285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1492 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 239, nonpolar: 397, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.58314 2.35447 6.90314 26.84653 15.33700 35.06042 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 470 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 418 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 406 Spheres center of coords (x y z): -7.03954165024631 16.3241602463054 26.7346687931035 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.89637761454601 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 42