usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 5.25739024390244 -1.5379756097561 14.0348048780488
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1267
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 898
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 898
Number of spheres polar: 214, nonpolar: 484, out of current total: 898
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.65600 15.23241 -11.53449 8.42166 4.06782 23.98700
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 500
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 444
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 431
Spheres center of coords (x y z): 5.94243554524362 -2.03767027842227 12.3732251276102
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.25934611444036
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 41