usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 8.18164516129032 26.6502258064516 3.55558064516129 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1089 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 648 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 647 Number of spheres polar: 164, nonpolar: 270, out of current total: 647 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.52708 18.01058 16.65735 36.62407 -6.43321 13.53846 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 388 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 333 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 310 Spheres center of coords (x y z): 6.12778590322581 27.3659861935484 3.21135593548387 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26257349802585 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 31