usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -9.29753333333333 16.1293 27.9111333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1351 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 669 Number of spheres polar: 134, nonpolar: 367, out of current total: 669 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.06919 0.67613 6.13508 26.01120 17.96001 37.87946 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): -8.08348538888889 15.7464103888889 27.5154484444445 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.04317850931171 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 30