usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 9.24065217391304 16.7630434782609 13.2570434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 921 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 694 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 91, nonpolar: 228, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.69491 19.14416 7.22441 26.75193 3.27033 21.53746 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 400 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 361 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 350 Spheres center of coords (x y z): 7.8751083142857 16.2572528 13.4521314857143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92978142205761 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 37 Final number of spheres that are from crystallographic ligand: 23