usefragsph not on
There are 45 ligand heavy atoms
Ligand center of coords (x y z): 13.4732222222222 22.7899111111111 5.37695555555556
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1361
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 895
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 895
Number of spheres polar: 238, nonpolar: 494, out of current total: 895
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.48308 23.43921 12.83374 30.76955 -4.60467 15.36744
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 499
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 428
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 400
Spheres center of coords (x y z): 12.98189705 21.336981275 6.748520625
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.94004092324131
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 45