usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -26.2826666666667 37.8876666666667 22.4664545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 808 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 571 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 564 Number of spheres polar: 113, nonpolar: 225, out of current total: 564 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.00665 -16.69535 28.01796 47.87269 12.49244 32.15471 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 235 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): -24.4480284659091 39.4298192045455 24.2354543181818 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.95479270530217 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 33