usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 14.6626666666667 58.2337575757576 36.0630303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 814 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 550 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 550 Number of spheres polar: 110, nonpolar: 184, out of current total: 550 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.17489 24.58678 48.30590 64.51541 26.14600 45.92960 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 360 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 15.13989 55.3572163157895 38.3885121754386 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01855783228998 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 33