usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 99.4314848484849 21.148303030303 17.4382121212121 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1410 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 978 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 978 Number of spheres polar: 188, nonpolar: 553, out of current total: 978 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 89.44798 109.38695 11.28750 31.09078 7.50600 27.27849 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 336 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 268 Spheres center of coords (x y z): 101.874188395522 21.5146729477612 18.6392097761194 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.7098162199448 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33