usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.7094473684211 29.7162894736842 13.8993947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1306 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 756 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 756 Number of spheres polar: 190, nonpolar: 367, out of current total: 756 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.81505 29.68797 19.75179 39.69497 3.92605 23.85014 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 449 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 379 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 367 Spheres center of coords (x y z): 19.6463098910082 31.3041647138965 13.551021852861 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55682680049812 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 38