usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 5.50073684210526 -1.32252631578947 14.139
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1073
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727
Number of spheres polar: 209, nonpolar: 389, out of current total: 727
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.12252 15.47440 -11.29797 8.60065 4.13978 23.92376
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 339
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 284
Spheres center of coords (x y z): 5.46195383802817 -3.43093246478873 13.6819951760563
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.46452110136314
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 19