DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-39.c.bkslab.org 16-Nov-11 16:44:34 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0004.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1694180 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -14.30900 -18.38400 -2.443001 grid max 26.69100 19.11600 35.05700 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 31 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 11.05022 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 90350 4200 9815 39 23769 0.05 bump 2 90350 7995 2856 39 9576 0.05 bump 3 90350 2677 1701 39 32382 0.02 bump 4 90350 4188 9464 39 21087 0.05 bump 5 90350 5536 1826 39 8370 0.03 bump 6 120634 2640 1048 32 90 0.01 bump 7 120634 4622 2646 32 312 0.02 bump 8 120634 1766 2359 32 39 0.02 bump 9 120634 2627 1032 32 318 0.02 bump 10 120634 4629 2889 32 1260 0.02 bump 11 120634 1766 4444 32 84 0.02 bump 12 220022 3348 7474 37 1080 0.04 bump 13 220022 1156 452 37 291 0.01 bump 14 220022 2379 53 37 450 0.01 bump 15 191071 4167 6300 39 4446 0.04 bump 16 191071 3379 0 39 25200 0.01 bump 17 191071 4250 4842 39 5463 0.04 bump 18 191071 900 6015 39 1521 0.02 bump 19 191071 900 2355 39 1665 0.01 bump 20 191071 4183 1581 39 2304 0.04 bump 21 191071 2768 0 39 8748 0.01 bump 22 191071 4184 6316 39 1728 0.04 bump 23 191071 900 2365 39 576 0.02 bump 24 191071 900 2360 39 1170 0.02 bump 25 191071 4208 6396 39 8217 0.04 bump 26 191071 3787 117 39 40392 0.01 bump 27 191071 4220 4821 39 16740 0.04 bump 28 191071 900 6078 39 1845 0.02 bump 29 191071 900 7103 39 1350 0.01 bump 30 191071 4207 1599 39 4212 0.03 bump 31 191071 5601 9 39 11664 0.02 bump 32 191071 4208 1601 39 5751 0.04 bump 33 191071 900 6284 39 567 0.02 bump 34 191071 900 6826 39 909 0.02 bump 35 219867 3348 3449 34 216 0.03 bump 36 219867 1156 447 34 44 0.01 bump 37 219867 1923 109 34 44 0.01 bump 38 219867 3330 3415 34 276 0.04 bump 39 219867 1156 453 34 44 0.01 bump 40 219867 2679 76 34 44 0.01 bump 41 219867 3348 3432 34 209 0.03 bump 42 219867 1156 447 34 43 0.01 bump 43 219867 3622 97 34 43 0.01 bump 44 219867 3326 5207 34 288 0.03 bump 45 219867 1156 459 34 45 0.00 bump 46 219867 5106 201 34 50 0.02 bump 47 17500 4181 15054 35 1173 0.05 bump 48 17500 3685 30847 35 9594 0.07 bump 49 17500 2197 309 35 2619 0.01 bump 50 17500 0 0 35 2892 0.00 no_match 51 17500 4183 14176 35 1107 0.06 bump 52 17500 3693 27478 35 8262 0.06 bump 53 17500 2799 663 35 2457 0.01 bump 54 17500 0 0 35 2514 0.00 no_match 55 17500 4204 14492 35 1050 0.06 bump 56 17500 3677 27210 35 7350 0.06 bump 57 17500 2604 175 35 2376 0.01 bump 58 17500 0 0 35 2424 0.00 no_match 59 17500 4199 15316 35 1215 0.06 bump 60 17500 3696 31464 35 10668 0.07 bump 61 17500 3238 684 35 2391 0.01 bump 62 17500 0 0 35 2916 0.00 no_match 63 52057 3298 320 43 600 0.01 bump 64 52057 1926 1037 43 78 0.02 bump 65 52057 4620 2655 43 756 0.02 bump 66 52057 3552 3385 43 54 0.03 bump 67 52057 3301 404 43 256 0.01 bump 68 52057 1926 3344 43 32 0.0 0.02 E 52057 2 13.08 94.49 10.00 -4.23 113.35 69 52057 5122 630 43 96 0.02 bump 70 52057 3556 2731 43 32 0.04 bump 71 94545 5181 0 40 510 0.02 bump 72 94545 3207 15125 40 1704 0.04 bump 73 94545 6222 7044 40 600 0.03 bump 74 94545 5181 0 40 387 0.02 bump 75 94545 3207 15657 40 1566 0.04 bump 76 94545 4844 5454 40 549 0.03 bump 77 94545 5181 0 40 729 0.02 bump 78 94545 4183 15296 40 2634 0.05 bump 79 94545 4813 7823 40 756 0.03 bump 80 94545 5181 0 40 843 0.02 bump 81 94545 4183 17986 40 2730 0.05 bump 82 94545 3936 15301 40 948 0.0 0.04 E 94545 2 1.03 136.65 5.78 -2.71 140.75 83 49553 4223 6452 44 612 0.04 bump 84 49553 4124 60 44 1728 0.01 bump 85 49553 4219 4811 44 639 0.04 bump 86 49553 2985 654 44 1512 0.02 bump 87 49553 2985 3290 44 468 0.03 bump 88 49553 4227 6457 44 576 0.04 bump 89 49553 4124 60 44 1728 0.01 bump 90 49553 4224 4814 44 612 0.04 bump 91 49553 2985 653 44 1728 0.02 bump 92 49553 2988 3310 44 396 0.03 bump 93 49553 4180 6348 44 612 0.04 bump 94 49553 4124 60 44 1728 0.01 bump 95 49553 4204 4803 44 639 0.04 bump 96 49553 2991 667 44 1512 0.02 bump 97 49553 2983 3270 44 468 0.03 bump 98 49553 4188 6365 44 576 0.04 bump 99 49553 4124 60 44 1728 0.01 bump 100 49553 4168 4745 44 612 0.04 bump 101 49553 2990 664 44 1728 0.02 bump 102 49553 2990 3320 44 396 0.03 bump 103 235874 1707 186 29 36 0.01 bump 104 235874 4220 4451 29 15 0.03 bump 105 235874 0 0 29 15 0.00 no_match 106 235874 1758 486 29 7 0.01 bump 107 235874 2328 326 29 24 0.01 bump 108 235874 4186 1581 29 8 0.03 bump 109 235874 485 291 29 16 0.01 bump 110 235874 1756 476 29 6 0.01 bump 111 97151 2233 12 43 11682 0.01 bump 112 97151 2236 6 43 11682 0.01 bump 113 97151 2824 7839 43 14832 0.04 bump 114 97151 1613 2767 43 1566 0.03 bump 115 97151 3810 12780 43 1530 0.05 bump 116 97151 4231 1598 43 6255 0.04 bump 117 97151 3218 964 43 2655 0.03 bump 118 97151 2625 2 43 5760 0.02 bump 119 97151 2884 7947 43 6480 0.04 bump 120 97151 1613 2504 43 639 0.02 bump 121 97151 3805 9954 43 864 0.05 bump 122 97151 2633 2 43 5760 0.01 bump 123 97151 4203 4770 43 6858 0.03 bump 124 97151 5755 27 43 30240 0.01 bump 125 97151 2883 6167 43 13896 0.04 bump 126 97151 1613 2420 43 1485 0.02 bump 127 97151 3790 4209 43 1593 0.05 bump 128 97151 4191 1588 43 14040 0.04 bump 129 97151 3407 9 43 9720 0.02 bump 130 97151 3404 9 43 9720 0.01 bump 131 97151 2882 4355 43 8424 0.04 bump 132 97151 1620 1883 43 1377 0.03 bump 133 97151 3791 9793 43 1125 0.05 bump 134 97151 4207 1594 43 3780 0.04 bump 135 40281 2232 8 34 4860 0.01 bump 136 40281 2236 4 34 4860 0.01 bump 137 40281 0 0 34 891 0.00 no_match 138 40281 4167 1572 34 1512 0.03 bump 139 40281 3253 974 34 648 0.02 bump 140 40281 2989 1 34 1296 0.02 bump 141 40281 0 0 34 648 0.00 no_match 142 40281 2979 1 34 1296 0.01 bump 143 40281 4241 4815 34 1782 0.04 bump 144 40281 5978 13 34 6804 0.02 bump 145 40281 0 0 34 1323 0.00 no_match 146 40281 5968 13 34 6804 0.02 bump 147 40281 6087 32 34 6318 0.02 bump 148 40281 6087 34 34 6318 0.02 bump 149 40281 0 0 34 1161 0.00 no_match 150 40281 4183 4731 34 1620 0.04 bump 151 94545 5242 0 40 729 0.02 bump 152 94545 4206 17500 40 3711 0.05 bump 153 94545 6241 8818 40 969 0.04 bump 154 94545 5242 0 40 600 0.02 bump 155 94545 4206 17113 40 3102 0.05 bump 156 94545 4841 6234 40 957 0.03 bump 157 94545 5242 0 40 966 0.02 bump 158 94545 4206 18220 40 5079 0.05 bump 159 94545 4813 9231 40 1278 0.03 bump 160 94545 5242 0 40 1266 0.02 bump 161 94545 4206 19765 40 5706 0.06 bump 162 94545 3941 9884 40 1797 0.03 bump 163 271764 3906 4975 36 343 0.03 bump 164 271764 4603 2910 36 5616 0.02 bump 165 271764 1755 16860 36 202 0.04 bump 166 271764 4187 1632 36 1743 0.03 bump 167 271764 3898 4494 36 547 0.02 bump 168 271764 4629 3333 36 8900 0.02 bump 169 271764 1747 34351 36 407 6.0 0.05 E 271764 2 -34.34 209.74 32.25 -2.41 205.24 170 271764 4177 1647 36 4249 0.03 bump 171 283044 2615 1306 41 5688 0.02 bump 172 283044 1547 19221 41 367 0.04 bump 173 283044 4621 2376 41 4242 0.02 bump 174 283044 4182 4024 41 257 0.04 bump 175 283044 2613 1305 41 2100 0.01 bump 176 283044 1547 19119 41 181 0.04 bump 177 283044 5040 612 41 905 0.02 bump 178 283044 4236 4108 41 181 0.04 bump 179 94545 5181 0 40 501 0.02 bump 180 94545 3252 15184 40 1977 0.04 bump 181 94545 6224 7632 40 528 0.04 bump 182 94545 5181 0 40 441 0.02 bump 183 94545 3252 12240 40 1677 0.04 bump 184 94545 4844 5525 40 537 0.03 bump 185 94545 5181 0 40 666 0.03 bump 186 94545 3252 15855 40 2508 0.04 bump 187 94545 4813 10404 40 729 0.0 0.04 E 94545 2 5.48 553.50 5.21 -2.15 562.05 188 94545 5181 0 40 699 0.02 bump 189 94545 4229 14518 40 3123 0.04 bump 190 94545 3936 8314 40 951 0.03 bump 191 54912 4167 3994 43 163458 0.04 bump 192 54912 5727 209 43 777600 0.02 bump 193 54912 4223 11856 43 294516 0.05 bump 194 54912 4239 11909 43 362070 0.05 bump 195 54912 4168 1579 43 410427 0.04 bump 196 54912 4208 3226 43 48195 0.04 bump 197 54912 2633 3 43 253692 0.02 bump 198 54912 4208 11754 43 72576 0.05 bump 199 54912 4220 9212 43 107406 0.05 bump 200 54912 2633 3 43 253692 0.01 bump 201 54912 4250 4123 43 89262 0.04 bump 202 54912 5760 54 43 589680 0.02 bump 203 54912 4225 9184 43 76302 0.05 bump 204 54912 4241 5301 43 175608 0.04 bump 205 54912 4183 1586 43 272484 0.03 bump 206 54912 4209 1598 43 48600 0.03 bump 207 54912 4395 3 43 185895 0.01 bump 208 54912 4240 3966 43 84888 0.05 bump 209 54912 4243 9331 43 21384 0.05 bump 210 54912 4183 4737 43 32967 0.04 bump 211 301672 2869 6731 40 1005 0.03 bump 212 301672 6426 1931 40 1113 0.03 bump 213 290293 4034 14274 44 3054 0.0 0.05 E 290293 2 -1.27 1106.15 5.45 -3.44 1106.89 214 290293 3223 6276 44 60372 0.04 bump 215 290293 3211 3930 44 72720 0.03 bump 216 290293 5022 6821 44 10926 0.05 bump 217 11209 3950 5020 30 69 0.03 bump 218 11209 2460 5618 30 432 0.0 0.03 E 11209 3 30.68 499.15 33.36 -8.70 554.50 219 11209 3542 1574 30 138 0.03 bump 220 11209 1833 7605 30 69 0.0 0.03 E 11209 2 0.97 7.18 12.27 -5.78 14.64 221 154366 2699 3730 43 61236 0.02 bump 222 154366 4168 9741 43 7047 0.05 bump 223 154366 1598 6584 43 15552 0.02 bump 224 258995 2237 10 42 720 0.01 bump 225 258995 2235 5 42 720 0.01 bump 226 258995 4189 6368 42 315 0.04 bump 227 258995 2719 3899 42 288 0.03 bump 228 258995 4207 1596 42 378 0.04 bump 229 258995 3222 962 42 324 0.02 bump 230 258995 2631 2 42 792 0.01 bump 231 258995 4208 6400 42 180 0.05 bump 232 258995 2719 4432 42 234 0.03 bump 233 258995 2631 2 42 792 0.01 bump 234 258995 3257 988 42 126 0.03 bump 235 258995 5969 5 42 288 0.02 bump 236 258995 4189 1586 42 162 0.04 bump 237 258995 2716 1659 42 108 0.03 bump 238 258995 5976 5 42 288 0.02 bump 239 258995 4181 1583 42 1224 0.04 bump 240 258995 2643 4 42 2808 0.01 bump 241 258995 3235 992 42 657 0.03 bump 242 258995 2719 3948 42 270 0.03 bump 243 258995 4218 1593 42 1062 0.03 bump 244 120632 2639 780 33 144 0.01 bump 245 120632 4619 2376 33 162 0.02 bump 246 120632 1513 405 33 42 0.02 bump 247 120632 2639 1040 33 72 0.01 bump 248 120632 5041 483 33 48 0.02 bump 249 120632 3818 1447 33 24 0.03 bump 250 235312 1707 186 28 60 0.01 bump 251 235312 4187 4910 28 14 0.04 bump 252 235312 4177 3179 28 12 0.04 bump 253 235312 2336 317 28 24 0.01 bump 254 235312 4165 1574 28 15 0.04 bump 255 235312 1761 478 28 6 0.01 bump 256 17390 4183 2736 23 9 0.03 bump 257 17390 2186 2091 23 9 2.0 0.02 E 17390 3 -1.19 264.75 7.25 -6.81 264.00 258 17390 4242 3413 23 12 0.04 bump 259 17390 2825 16446 23 12 14.0 0.05 E 17390 3 -9.91 122.63 7.04 -6.39 113.37 260 17390 4177 2773 23 12 0.04 bump 261 17390 2609 1062 23 12 0.0 0.01 E 17390 3 -12.60 222.57 7.01 -6.40 210.59 262 17390 4209 2793 23 9 0.04 bump 263 17390 3206 3175 23 9 4.0 0.02 E 17390 3 11.65 188.42 7.06 -6.34 200.79 264 201853 2639 792 37 144 0.02 bump 265 201853 4620 2368 37 162 0.02 bump 266 201853 793 157 37 42 0.01 bump 267 201853 2099 641 37 63 0.02 bump 268 201853 2639 896 37 42 0.01 bump 269 201853 2758 84 37 63 0.01 bump 270 201853 2819 1988 37 21 0.03 bump 271 201853 2766 84 37 63 0.01 bump 272 219442 3345 3853 33 120 0.03 bump 273 219442 1156 467 33 33 0.00 bump 274 219442 2419 324 33 61 0.01 bump 275 219442 3347 3446 33 336 0.04 bump 276 219442 1156 475 33 45 0.01 bump 277 219442 4447 183 33 45 0.02 bump 278 54593 4227 5001 31 369 0.04 bump 279 54593 6652 3652 31 2160 0.02 bump 280 54593 3684 9387 31 300 0.05 bump 281 54593 4180 9667 31 534 0.0 0.04 E 54593 2 -0.66 151.02 7.63 -2.18 155.81 282 54593 4219 9796 31 66 0.04 bump 283 54593 5119 3203 31 378 0.03 bump 284 54593 3676 10626 31 78 0.04 bump 285 54593 3220 1001 31 144 0.03 bump 286 258080 3240 4524 39 60441 0.03 bump 287 258080 4207 11938 39 19962 0.05 bump 288 258080 3327 9927 39 6759 0.04 bump 289 258080 4169 19634 39 4893 0.0 0.06 E 258080 2 0.07 -2.91 5.40 -2.51 0.05 290 94212 2438 0 41 942 0.02 bump 291 94212 4180 13521 41 6429 0.05 bump 292 94212 6225 12819 41 1446 0.0 0.05 E 94212 2 -0.83 407.25 6.72 -1.77 411.38 293 94212 2438 0 41 732 0.02 bump 294 94212 4180 13112 41 4368 0.04 bump 295 94212 4841 6398 41 1215 0.03 bump 296 94212 2438 0 41 1134 0.01 bump 297 94212 4180 13300 41 6231 0.05 bump 298 94212 4988 8418 41 1692 0.04 bump 299 94212 2438 0 41 1425 0.02 bump 300 94212 4180 14279 41 7416 0.05 bump 301 94212 3941 8186 41 2049 0.03 bump 302 120517 2640 917 36 315 0.01 bump 303 120517 4622 2646 36 1080 0.02 bump 304 120517 5422 12735 36 114 0.04 bump 305 120517 2639 1048 36 1488 0.01 bump 306 120517 4630 2880 36 3933 0.02 bump 307 120517 5428 4832 36 168 0.04 bump 308 93781 3223 14680 40 5052 0.04 bump 309 93781 2769 0 40 825 0.01 bump 310 93781 6227 9332 40 1305 0.04 bump 311 93781 3223 15032 40 4305 0.04 bump 312 93781 2769 0 40 624 0.02 bump 313 93781 4844 6323 40 1128 0.03 bump 314 93781 4167 14146 40 6780 0.05 bump 315 93781 2769 0 40 1029 0.02 bump 316 93781 4987 9889 40 1626 0.03 bump 317 93781 4167 14534 40 7023 0.05 bump 318 93781 2769 0 40 1221 0.01 bump 319 93781 3936 13240 40 2148 0.0 0.03 E 93781 2 0.98 213.74 5.24 -1.75 218.20 320 17626 2794 2060 38 393 0.02 bump 321 17626 3697 12984 38 1890 0.05 bump 322 17626 2197 120 38 393 0.01 bump 323 17626 478 1037 38 1128 0.00 bump 324 17626 2794 2061 38 405 0.02 bump 325 17626 3688 12755 38 2325 0.05 bump 326 17626 2817 924 38 564 0.01 bump 327 17626 0 0 38 1335 0.00 no_match 328 17626 2808 2015 38 375 0.02 bump 329 17626 3696 12773 38 1920 0.05 bump 330 17626 2604 225 38 555 0.01 bump 331 17626 0 0 38 1308 0.00 no_match 332 17626 2799 2051 38 423 0.02 bump 333 17626 3691 12972 38 2310 0.04 bump 334 17626 3236 364 38 423 0.02 bump 335 17626 0 0 38 1503 0.00 no_match EOF: ../database_link/dbgen_lig_0004.db.gz end of file encountered total minimization steps = 7715 for debugging, time = 13.95000 solvation corrected scores: (a) 1 258080 score: 0.052 nathvy = 39 nconfs = 4893 2 11209 score: 14.638 nathvy = 30 nconfs = 69 3 52057 score: 113.349 nathvy = 43 nconfs = 32 4 17390 score: 113.366 nathvy = 23 nconfs = 12 5 94545 score: 140.749 nathvy = 40 nconfs = 948 6 54593 score: 155.805 nathvy = 31 nconfs = 534 7 17390 score: 200.791 nathvy = 23 nconfs = 9 8 271764 score: 205.238 nathvy = 36 nconfs = 407 9 17390 score: 210.589 nathvy = 23 nconfs = 12 10 93781 score: 218.205 nathvy = 40 nconfs = 2148 11 17390 score: 264.001 nathvy = 23 nconfs = 9 12 94212 score: 411.376 nathvy = 41 nconfs = 1446 13 11209 score: 554.499 nathvy = 30 nconfs = 432 14 94545 score: 562.049 nathvy = 40 nconfs = 729 15 290293 score: 1106.891 nathvy = 44 nconfs = 3054 Date and Time: 16-Nov-11 16:44:48 elapsed time (sec): 13.9700