usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 12.916125 23.038125 5.56215
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1151
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 778
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 778
Number of spheres polar: 201, nonpolar: 369, out of current total: 778
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.93711 22.88866 13.13441 32.94117 -4.36832 15.52253
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 442
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 380
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 361
Spheres center of coords (x y z): 12.7695709972299 21.2399743767313 7.19252529085872
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.19273634041794
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 40