usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -7.557 17.0350476190476 25.0533571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1402 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 192, nonpolar: 391, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.51700 2.44014 7.04108 27.02584 15.27810 35.01591 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 279 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 221 Spheres center of coords (x y z): -7.08484212669683 16.6008259728507 26.7911224886878 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02026978359095 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 42