usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -9.07571052631579 16.2985526315789 27.2891578947368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1363 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 832 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 832 Number of spheres polar: 204, nonpolar: 501, out of current total: 832 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.71276 0.89656 6.30341 26.12482 17.31500 37.17670 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 448 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 364 Spheres center of coords (x y z): -8.1159032967033 15.3881012637363 27.3021362637363 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.42607199838325 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38