usefragsph not on
There are 54 ligand heavy atoms
Ligand center of coords (x y z): 12.7266111111111 22.5570185185185 5.64890740740741
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1254
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 870
Number of spheres polar: 153, nonpolar: 533, out of current total: 870
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.73415 22.72283 12.58815 31.31762 -4.33894 15.56928
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 501
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 432
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 414
Spheres center of coords (x y z): 12.8984755072464 20.8307914492754 6.75186084541063
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.45182651180848
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 54