usefragsph not on
There are 47 ligand heavy atoms
Ligand center of coords (x y z): 12.9514680851064 22.9084042553192 6.0636170212766
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1363
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 889
Number of spheres polar: 189, nonpolar: 455, out of current total: 889
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.98335 22.94989 13.02200 31.98761 -3.92576 15.98544
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 485
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 426
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 417
Spheres center of coords (x y z): 12.7108886091127 21.4137432613909 7.30546378896882
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.89902194013806
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 47