Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.050
Maximum number of states set to: 1

Adjusting structures for pH 7.050000e+00 and minimum probability 1.000000e-02
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            60   Conj_Acid 10.71
                                            68   Conj_Acid  9.76
                                            86   Conj_Acid  9.77
                                            90   Conj_Acid  7.96
                                            91   Conj_Acid  7.96
                                            92   Conj_Acid  7.96
                                             9   Conj_Base  0.67
                                            11   Conj_Base -2.67
                                            16   Conj_Base -1.99
                                            24   Conj_Base -2.85
 pKa penalty:                                 0.07 kcal/mol
     Charging penalty:                        0.07 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included):  0.07 kcal/mol
 Total Charge: 1
---------------------------
Processing Input Structure #2
        Title: TEMP00000002
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            60   Conj_Acid 10.71
                                            68   Conj_Acid  9.76
                                            86   Conj_Acid  9.77
                                            90   Conj_Acid  7.96
                                            91   Conj_Acid  7.96
                                            92   Conj_Acid  7.96
                                             9   Conj_Base  0.67
                                            11   Conj_Base -2.67
                                            16   Conj_Base -1.99
                                            24   Conj_Base -2.85
 pKa penalty:                                 0.07 kcal/mol
     Charging penalty:                        0.07 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included):  0.07 kcal/mol
 Total Charge: 1
---------------------------