usefragsph not on
There are 59 ligand heavy atoms
Ligand center of coords (x y z): 5.50737288135593 -0.926457627118644 12.8614745762712
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1457
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1002
Number of spheres polar: 221, nonpolar: 522, out of current total: 1002
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.45395 15.43969 -10.87418 9.06700 3.02338 22.85452
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 347
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 292
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 59
Spheres center of coords (x y z): 5.50737288135593 -0.926457627118644 12.8614745762712
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.47240134887552
WARNING: removing a crystallographic sphere since 59>45 max spheres are present
WARNING: removing a crystallographic sphere since 58>45 max spheres are present
WARNING: removing a crystallographic sphere since 57>45 max spheres are present
WARNING: removing a crystallographic sphere since 56>45 max spheres are present
WARNING: removing a crystallographic sphere since 55>45 max spheres are present
WARNING: removing a crystallographic sphere since 54>45 max spheres are present
WARNING: removing a crystallographic sphere since 53>45 max spheres are present
WARNING: removing a crystallographic sphere since 52>45 max spheres are present
WARNING: removing a crystallographic sphere since 51>45 max spheres are present
WARNING: removing a crystallographic sphere since 50>45 max spheres are present
WARNING: removing a crystallographic sphere since 49>45 max spheres are present
WARNING: removing a crystallographic sphere since 48>45 max spheres are present
WARNING: removing a crystallographic sphere since 47>45 max spheres are present
WARNING: removing a crystallographic sphere since 46>45 max spheres are present
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 45