usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 15.4442222222222 21.7713888888889 5.81291666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1405 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 860 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 181, nonpolar: 449, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.46595 25.38789 11.80600 31.48386 -4.17054 15.77801 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 478 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 415 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 391 Spheres center of coords (x y z): 15.0264535038363 21.3348590792839 7.32534608695652 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39769947130885 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 36