usefragsph not on
There are 58 ligand heavy atoms
Ligand center of coords (x y z): 5.29287931034483 -1.46424137931034 14.2095517241379
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1568
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 887
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 887
Number of spheres polar: 184, nonpolar: 448, out of current total: 887
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.63609 15.26300 -11.43803 8.49094 4.29149 24.12633
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 518
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 457
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 445
Spheres center of coords (x y z): 5.18870566292134 -1.85019820224719 12.9819666966292
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.54757788106499
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 58