usefragsph not on
There are 57 ligand heavy atoms
Ligand center of coords (x y z): 5.32594736842105 -1.46780701754386 14.1989473684211
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1457
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 903
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 903
Number of spheres polar: 162, nonpolar: 491, out of current total: 903
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.59567 15.09109 -11.45037 8.53071 4.20094 24.15042
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 523
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 452
Spheres center of coords (x y z): 5.41292592920354 -1.91098265486726 13.121429380531
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.57240492157594
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 57