usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): -9.4474 16.402975 27.910925
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1284
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 633
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 633
Number of spheres polar: 96, nonpolar: 351, out of current total: 633
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.19957 0.45012 6.41276 25.97900 17.91446 37.87549
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 376
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 321
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 310
Spheres center of coords (x y z): -8.60002522580644 15.2296693548387 27.8768541290323
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.4712630635355
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 40