usefragsph not on
There are 58 ligand heavy atoms
Ligand center of coords (x y z): -9.12589655172414 14.8115 28.0854310344827
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1289
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 818
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 818
Number of spheres polar: 212, nonpolar: 441, out of current total: 818
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.89241 0.87080 4.86081 24.39244 18.14271 37.91156
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 462
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 397
Spheres center of coords (x y z): -9.04521450881612 13.7672198488665 28.3108485390428
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.10661188905379
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 58