usefragsph not on There are 80 ligand heavy atoms Ligand center of coords (x y z): -9.1903125 15.6269875 27.8880375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 989 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 989 Number of spheres polar: 209, nonpolar: 527, out of current total: 989 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.04543 0.77573 5.64098 25.59090 16.79700 38.82900 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 584 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 507 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 80 Spheres center of coords (x y z): -9.1903125 15.6269875 27.8880375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.76779379489039 WARNING: removing a crystallographic sphere since 80>60 max spheres are present WARNING: removing a crystallographic sphere since 79>60 max spheres are present WARNING: removing a crystallographic sphere since 78>60 max spheres are present WARNING: removing a crystallographic sphere since 77>60 max spheres are present WARNING: removing a crystallographic sphere since 76>60 max spheres are present WARNING: removing a crystallographic sphere since 75>60 max spheres are present WARNING: removing a crystallographic sphere since 74>60 max spheres are present WARNING: removing a crystallographic sphere since 73>60 max spheres are present WARNING: removing a crystallographic sphere since 72>60 max spheres are present WARNING: removing a crystallographic sphere since 71>60 max spheres are present WARNING: removing a crystallographic sphere since 70>60 max spheres are present WARNING: removing a crystallographic sphere since 69>60 max spheres are present WARNING: removing a crystallographic sphere since 68>60 max spheres are present WARNING: removing a crystallographic sphere since 67>60 max spheres are present WARNING: removing a crystallographic sphere since 66>60 max spheres are present WARNING: removing a crystallographic sphere since 65>60 max spheres are present WARNING: removing a crystallographic sphere since 64>60 max spheres are present WARNING: removing a crystallographic sphere since 63>60 max spheres are present WARNING: removing a crystallographic sphere since 62>60 max spheres are present WARNING: removing a crystallographic sphere since 61>60 max spheres are present Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 60