Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.050
Maximum number of states set to: 1

Adjusting structures for pH 7.050000e+00 and minimum probability 1.000000e-02
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            99   Conj_Acid  9.54
                                            66   Conj_Acid 12.29
                                            84   Conj_Acid  9.70
                                            89   Conj_Acid 10.18
                                            97   Conj_Acid 10.19
                                            98   Conj_Acid 10.19
                                            40   Conj_Base  4.54
                                            76   Conj_Acid  7.28
                                           100   Conj_Acid  7.28
                                            42   Conj_Base -2.37
                                            54   Conj_Base -1.16
 pKa penalty:                                 0.28 kcal/mol
     Charging penalty:                        0.28 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included):  0.28 kcal/mol
 Total Charge: 0
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