usefragsph not on There are 66 ligand heavy atoms Ligand center of coords (x y z): -22.5634090909091 39.0808636363636 27.284 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1593 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1091 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1091 Number of spheres polar: 232, nonpolar: 533, out of current total: 1091 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -32.53478 -12.59974 29.12136 49.07584 17.15100 37.41700 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 606 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 524 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 66 Spheres center of coords (x y z): -22.5634090909091 39.0808636363636 27.284 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.75499130290292 WARNING: removing a crystallographic sphere since 66>60 max spheres are present WARNING: removing a crystallographic sphere since 65>60 max spheres are present WARNING: removing a crystallographic sphere since 64>60 max spheres are present WARNING: removing a crystallographic sphere since 63>60 max spheres are present WARNING: removing a crystallographic sphere since 62>60 max spheres are present WARNING: removing a crystallographic sphere since 61>60 max spheres are present Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 60