Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.050
Maximum number of states set to: 1

Adjusting structures for pH 7.050000e+00 and minimum probability 1.000000e-02
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                           105   Conj_Acid 14.10
                                           106   Conj_Acid 16.13
                                            65   Conj_Acid 15.20
                                            83   Conj_Acid 12.06
                                            26   Conj_Base  2.42
                                           107   Conj_Acid  7.82
                                            44   Conj_Base -0.85
                                            47   Conj_Base -1.30
                                            56   Conj_Base -2.60
                                            57   Conj_Base -1.05
                                            12   Conj_Base -0.08
                                            34   Conj_Base -1.23
                                            41   Conj_Base -2.22
 pKa penalty:                                 0.09 kcal/mol
     Charging penalty:                        0.09 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included):  0.09 kcal/mol
 Total Charge: 1
---------------------------
Processing Input Structure #2
        Title: TEMP00000002
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                           105   Conj_Acid 14.10
                                           106   Conj_Acid 16.13
                                            65   Conj_Acid 15.20
                                            83   Conj_Acid 12.06
                                            26   Conj_Base  2.42
                                           107   Conj_Acid  7.82
                                            44   Conj_Base -0.85
                                            47   Conj_Base -1.30
                                            56   Conj_Base -2.60
                                            57   Conj_Base -1.05
                                            12   Conj_Base -0.08
                                            34   Conj_Base -1.23
                                            41   Conj_Base -2.22
 pKa penalty:                                 0.09 kcal/mol
     Charging penalty:                        0.09 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included):  0.09 kcal/mol
 Total Charge: 1
---------------------------