usefragsph not on There are 51 ligand heavy atoms Ligand center of coords (x y z): 10.5490784313725 23.9959607843137 4.9958431372549 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1307 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 905 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905 Number of spheres polar: 199, nonpolar: 458, out of current total: 905 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.68600 20.54469 14.03774 33.51072 -4.90887 14.98917 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 508 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 444 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 426 Spheres center of coords (x y z): 10.9055849061033 22.2370883333334 5.86094788732394 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.8624596763556 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 51