usefragsph not on There are 41 ligand heavy atoms Ligand center of coords (x y z): 11.1104390243902 24.0083414634146 5.00736585365853 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1419 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 880 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 873 Number of spheres polar: 216, nonpolar: 389, out of current total: 873 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.15700 21.10339 14.05381 33.97105 -4.79640 14.89169 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 500 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 436 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 422 Spheres center of coords (x y z): 11.1625409004739 22.1758424644549 6.28534305687204 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54515160201619 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 41