usefragsph not on There are 51 ligand heavy atoms Ligand center of coords (x y z): 13.4000196078431 22.1118431372549 6.49849019607843 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1408 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 906 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 906 Number of spheres polar: 190, nonpolar: 532, out of current total: 906 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.40395 23.39664 12.12354 30.61103 -3.48813 16.47983 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 493 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 421 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 420 Spheres center of coords (x y z): 12.7941405714286 21.0939607142857 6.97579826190476 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.72271164367782 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 51