usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.6827105263158 -0.680763157894737 17.1627368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1238 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 683 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 167, nonpolar: 351, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.75155 29.66195 -10.66104 9.04363 7.28840 27.04674 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 212 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 18.7909584210526 -1.57702336842105 18.0257334736842 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21813191577041 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38