usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.6827105263158 -0.680763157894737 17.1627368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1238 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 683 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 167, nonpolar: 351, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.75155 29.66195 -10.66104 9.04363 7.28840 27.04674 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): 19.1797286494253 -2.10719083333333 18.2798140517242 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55144645619181 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 38