usefragsph not on There are 47 ligand heavy atoms Ligand center of coords (x y z): 19.9596808510638 29.2200212765957 12.8870425531915 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1390 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 875 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 875 Number of spheres polar: 192, nonpolar: 455, out of current total: 875 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.07084 29.94966 19.23849 39.21224 2.89067 22.84216 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 499 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 440 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 428 Spheres center of coords (x y z): 19.6893983411215 29.7908643925234 12.2914795794392 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48767659745487 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 47