usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 12.5671219512195 22.6949268292683 5.30953658536585
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1378
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 880
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 880
Number of spheres polar: 236, nonpolar: 474, out of current total: 880
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.57966 22.56573 12.70100 32.61138 -4.67655 15.29972
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 476
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 419
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 397
Spheres center of coords (x y z): 12.41411 20.8226118891688 6.72922735516373
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.32307744901747
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 41