usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -9.07571052631579 16.2985526315789 27.2891578947368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1363 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 832 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 832 Number of spheres polar: 213, nonpolar: 504, out of current total: 832 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.71276 0.89656 6.30341 26.12482 17.31500 37.17670 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 448 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 365 Spheres center of coords (x y z): -8.15343665753425 15.3597492054794 27.2989667397261 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.40848442430235 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 38