usefragsph not on
There are 60 ligand heavy atoms
Ligand center of coords (x y z): 5.09016666666667 -1.54036666666667 14.5131666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1426
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 785
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 785
Number of spheres polar: 139, nonpolar: 420, out of current total: 785
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.89836 15.02867 -11.51680 8.42044 4.53828 24.28313
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 461
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 415
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 395
Spheres center of coords (x y z): 4.86428194936709 -1.74030843037975 13.1557600506329
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.32103620081566
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 60