usefragsph not on There are 59 ligand heavy atoms Ligand center of coords (x y z): 22.0004576271186 30.7732881355932 12.7198305084746 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1638 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 982 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 982 Number of spheres polar: 252, nonpolar: 477, out of current total: 982 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.16563 31.99430 20.79698 43.35300 2.72709 22.71843 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 578 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 498 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 462 Spheres center of coords (x y z): 21.4609285064935 30.5145247835498 12.0080452813853 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.83016126666197 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 59